PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g11516.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 195aa    MW: 22296.8 Da    PI: 10.7478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g11516.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1561.4e-1734115190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       kfYn+YAk++GF +++s+ ++       +++  +C++egk +++ ++  +++r ra +++gCka++ +k + dg   +++++ eHnH+l+
  Bradi5g11516.1.p  34 KFYNAYAKHTGFGLKRSQRNT-------YRSYIRCTREGKYTTSVRD-GERQRDRARKKIGCKAHMGLKVNGDGGCIIKSMHFEHNHQLS 115
                       6*************9987444.......68889************99.99999***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1334115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKKNIAKNMQ APELPKNLIP IVGQHFSTFD EAFKFYNAYA KHTGFGLKRS QRNTYRSYIR  60
CTREGKYTTS VRDGERQRDR ARKKIGCKAH MGLKVNGDGG CIIKSMHFEH NHQLSLSLSM  120
LVLLHSHKRV NPTLQDYIKD LQLSNVKHVN IMSLLTRLSG GRDKLGCHNR DVLNMKAKNT  180
RKESADDVQI LFKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757782.11e-61PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLI1H0E11e-115I1H0E1_BRADI; Uncharacterized protein
STRINGBRADI1G47460.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-12FAR1-related sequence 5